论文标题
身体受限的神经网络以解决神经元模型的反问题
Physically constrained neural networks to solve the inverse problem for neuron models
论文作者
论文摘要
系统生物学和系统尤其是神经生理学,最近已成为生物医学科学中许多关键应用的强大工具。然而,这样的模型通常基于需要临时计算策略并提出极高的计算需求的多尺度(可能是多物理)策略的复杂组合。深度神经网络领域的最新发展证明了与传统模型相比,具有非线性,通用近似值的可能性,以估算具有显着速度和准确性的高度非线性和复杂问题的解决方案。合成数据验证后,我们使用所谓的物理约束神经网络(PINN)同时求解了生物学上可行的Hodgkin-Huxley模型,并从可变和恒定的电流刺激下从真实数据中推断出其参数和隐藏的时间巡回仪,表明跨尖峰和忠实信号重新构造的可变性极低。我们获得的参数范围也与先验知识兼容。我们证明可以将详细的生物学知识提供给神经网络,从而能够在模拟和真实数据上拟合复杂的动态。
Systems biology and systems neurophysiology in particular have recently emerged as powerful tools for a number of key applications in the biomedical sciences. Nevertheless, such models are often based on complex combinations of multiscale (and possibly multiphysics) strategies that require ad hoc computational strategies and pose extremely high computational demands. Recent developments in the field of deep neural networks have demonstrated the possibility of formulating nonlinear, universal approximators to estimate solutions to highly nonlinear and complex problems with significant speed and accuracy advantages in comparison with traditional models. After synthetic data validation, we use so-called physically constrained neural networks (PINN) to simultaneously solve the biologically plausible Hodgkin-Huxley model and infer its parameters and hidden time-courses from real data under both variable and constant current stimulation, demonstrating extremely low variability across spikes and faithful signal reconstruction. The parameter ranges we obtain are also compatible with prior knowledge. We demonstrate that detailed biological knowledge can be provided to a neural network, making it able to fit complex dynamics over both simulated and real data.