论文标题

细胞外囊泡挤压药物负荷的粗粒细粒分子模拟

Coarse-Grained Molecular Simulation of Extracellular Vesicles Squeezing for Drug Loading

论文作者

Islam, Khayrul, Razizadeh, Meghdad, Liu, Yaling

论文摘要

近年来,这种细胞外囊泡已成为下一代药物输送平台等有前途的载体。在不损害细胞外囊泡膜的情况下有效地加载外源性赤道是一个主要挑战。通过纳米流体通道进行快速挤压是一种广泛使用的方法,可通过临时在膜上暂时生成的纳米孔中加载外源性货物。但是,纳米孔开口的确切机制和动力学以及在挤压过程中通过纳米孔负载的货物仍然未知,由于EV的小尺寸和快速瞬态过程,因此无法对其进行可视化或实验量化。本文开发了一种系统性算法,以模拟纳米孔的形成,并通过利用用流体动力学的粗粒(CG)分子动力学模拟的细胞外囊泡(EV)挤压过程来预测药物载荷。 EV CG珠与隐式波动的晶格Boltzmann溶剂结合在一起。分析了EV性质和各种挤压测试参数的影响,例如EV大小,流速,通道宽度和长度,对孔形成和药物载荷效率的影响。基于模拟结果,提供了一个相图作为纳米渠道几何形状和挤压速度的设计指南,以在膜上产生毛孔而不会损坏EV。该方法可以用于优化纳米流体设备的配置和流程设置,以使所需的药物加载到EV中

In recent years, extracellular vesicles such have become promising carriers as the next-generation drug delivery platforms. Effective loading of exogenous cargos without compromising the extracellular vesicle membrane is a major challenge. Rapid squeezing through nanofluidic channels is a widely used approach to load exogenous cargoes into the EV through the nanopores generated temporarily on the membrane. However, the exact mechanism and dynamics of nanopores opening, as well as cargo loading through nanopores during the squeezing process remains unknown and is impossible to be visualized or quantified experimentally due to the small size of the EV and the fast transient process. This paper developed a systemic algorithm to simulate nanopore formation and predict drug loading during extracellular vesicle (EV) squeezing by leveraging the power of coarse-grain (CG) molecular dynamics simulations with fluid dynamics. The EV CG beads are coupled with implicit Fluctuating Lattice Boltzmann solvent. Effects of EV property and various squeezing test parameters, such as EV size, flow velocity, channel width, and length, on pore formation and drug loading efficiency are analyzed. Based on the simulation results, a phase diagram is provided as a design guidance for nanochannel geometry and squeezing velocity to generate pores on membrane without damaging the EV. This method can be utilized to optimize the nanofluidic device configuration and flow setup to obtain desired drug loading into EVs

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