论文标题
部分可观测时空混沌系统的无模型预测
Longitudinal detection of new MS lesions using Deep Learning
论文作者
论文摘要
检测新的多发性硬化症(MS)病变是该疾病进化的重要标志。基于学习的方法的适用性可以有效地自动化此任务。然而,缺乏带有新出现病变的注释纵向数据是训练健壮和概括模型的限制因素。在这项工作中,我们描述了一条基于学习的管道,该管道解决了检测和细分新MS病变的挑战性任务。首先,我们建议使用单个时间点对在分割任务进行训练的模型中使用转移学习。因此,我们从更轻松的任务中利用知识,并为此提供更多注释的数据集。其次,我们提出了一种数据综合策略,以使用单个时间点扫描生成新的纵向时间点。通过这种方式,我们将检测模型预算到大型合成注释数据集上。最后,我们使用旨在模拟MRI中数据多样性的数据实践技术。通过这样做,我们增加了可用的小注释纵向数据集的大小。我们的消融研究表明,每个贡献都会提高分割精度。使用拟议的管道,我们获得了MSSEG2 MICCAI挑战中新的MS病变的分割和检测的最佳分数。
The detection of new multiple sclerosis (MS) lesions is an important marker of the evolution of the disease. The applicability of learning-based methods could automate this task efficiently. However, the lack of annotated longitudinal data with new-appearing lesions is a limiting factor for the training of robust and generalizing models. In this work, we describe a deep-learning-based pipeline addressing the challenging task of detecting and segmenting new MS lesions. First, we propose to use transfer-learning from a model trained on a segmentation task using single time-points. Therefore, we exploit knowledge from an easier task and for which more annotated datasets are available. Second, we propose a data synthesis strategy to generate realistic longitudinal time-points with new lesions using single time-point scans. In this way, we pretrain our detection model on large synthetic annotated datasets. Finally, we use a data-augmentation technique designed to simulate data diversity in MRI. By doing that, we increase the size of the available small annotated longitudinal datasets. Our ablation study showed that each contribution lead to an enhancement of the segmentation accuracy. Using the proposed pipeline, we obtained the best score for the segmentation and the detection of new MS lesions in the MSSEG2 MICCAI challenge.