论文标题

动力平均场理论:从生态系统到反应网络

Dynamical mean-field theory: from ecosystems to reaction networks

论文作者

De Giuli, Eric, Scalliet, Camille

论文摘要

自然生态系统和生化反应网络都涉及异质性药物的种群,其合作和竞争性相互作用会导致物种丰富的丰富动态,尽管在较大的尺度上。大型生态系统中多样性的维持是一个长期存在的难题,通过导致随机模型的动态平均场理论的推导,最近进步取得了进步。特别是,最近已经显示,这些随机模型具有混乱的相,其中丰富的阶段显示出野生波动。当包括适度的空间结构时,这些波动将稳定并保持多样性。如果这些现象在生化反应网络中如何具有相似之处,目前尚不清楚这些现象。建立这种联系引起了人们的关注,因为生命需要大量分子物种之间的合作。在这项工作中,我们发现了一个反应网络,其大规模行为恢复了理论生态中最近考虑的随机Lotka-Volterra模型。我们阐明了得出其大规模描述所需的假设,并揭示了对噪声上的基本假设,以恢复先前的动态平均场理论。然后,我们展示了局部详细的平衡和反应速率的积极性,这是化学反应网络的关键物理要求,为建立相关的生化反应网络的动态平均场理论提供了障碍。最后,我们概述了未来的前景和挑战。

Both natural ecosystems and biochemical reaction networks involve populations of heterogeneous agents whose cooperative and competitive interactions lead to a rich dynamics of species' abundances, albeit at vastly different scales. The maintenance of diversity in large ecosystems is a longstanding puzzle, towards which recent progress has been made by the derivation of dynamical mean-field theories of random models. In particular, it has recently been shown that these random models have a chaotic phase in which abundances display wild fluctuations. When modest spatial structure is included, these fluctuations are stabilized and diversity is maintained. If and how these phenomena have parallels in biochemical reaction networks is currently unknown. Making this connection is of interest since life requires cooperation among a large number of molecular species. In this work, we find a reaction network whose large-scale behavior recovers the random Lotka-Volterra model recently considered in theoretical ecology. We clarify the assumptions necessary to derive its large-scale description, and reveal the underlying assumptions made on the noise to recover previous dynamical mean-field theories. Then, we show how local detailed balance and the positivity of reaction rates, which are key physical requirements of chemical reaction networks, provide obstructions towards the construction of an associated dynamical mean-field theory of biochemical reaction networks. Finally, we outline prospects and challenges for the future.

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