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Recent results in the literature suggest that the penultimate (second-to-last) layer representations of neural networks that are trained for classification exhibit a clustering property called neural collapse (NC). We study the implicit bias of stochastic gradient descent (SGD) in favor of low-depth solutions when training deep neural networks. We characterize a notion of effective depth that measures the first layer for which sample embeddings are separable using the nearest-class center classifier. Furthermore, we hypothesize and empirically show that SGD implicitly selects neural networks of small effective depths. Secondly, while neural collapse emerges even when generalization should be impossible - we argue that the \emph{degree of separability} in the intermediate layers is related to generalization. We derive a generalization bound based on comparing the effective depth of the network with the minimal depth required to fit the same dataset with partially corrupted labels. Remarkably, this bound provides non-trivial estimations of the test performance. Finally, we empirically show that the effective depth of a trained neural network monotonically increases when increasing the number of random labels in data.