论文标题
药物相互作用提取的两个步骤关节模型
Two Step Joint Model for Drug Drug Interaction Extraction
论文作者
论文摘要
当患者需要服用药物时,尤其是同时服用一种以上的药物时,应该震惊地认为存在可能存在药物与药物相互作用。药物之间的相互作用可能会对患者产生负面影响,甚至导致死亡。通常,通常在其药物标签或包装插入物中描述与特定药物(或标签药)冲突的药物。由于越来越多的新药投入市场,因此很难通过手动收集此类信息。我们参加了2018年的药物标签挑战(TAC),选择Task1和Task2分别从药物标签挑战中提取药物相互作用(DDI),分别自动提取与DDI相关的提及和DDI关系。我们建议将任务1作为命名实体识别(NER)任务和任务2作为关系提取(RE)任务,然后在管道中求解它,而是提出了一个两步关节模型来检测DDI,并共同提及。序列标记系统(CNN-GRU编码器描述器)首先找到沉淀物并搜索其细粒触发器,并在第二步中确定每个沉淀剂的DDI。此外,建立了基于规则的模型,以确定药代动力学相互作用的子类型。我们的系统在Task1和Task2中都取得了最佳结果。 F-MEASET在任务1中达到0.46,任务2中的F-MEASE达到0.40。
When patients need to take medicine, particularly taking more than one kind of drug simultaneously, they should be alarmed that there possibly exists drug-drug interaction. Interaction between drugs may have a negative impact on patients or even cause death. Generally, drugs that conflict with a specific drug (or label drug) are usually described in its drug label or package insert. Since more and more new drug products come into the market, it is difficult to collect such information by manual. We take part in the Drug-Drug Interaction (DDI) Extraction from Drug Labels challenge of Text Analysis Conference (TAC) 2018, choosing task1 and task2 to automatically extract DDI related mentions and DDI relations respectively. Instead of regarding task1 as named entity recognition (NER) task and regarding task2 as relation extraction (RE) task then solving it in a pipeline, we propose a two step joint model to detect DDI and it's related mentions jointly. A sequence tagging system (CNN-GRU encoder-decoder) finds precipitants first and search its fine-grained Trigger and determine the DDI for each precipitant in the second step. Moreover, a rule based model is built to determine the sub-type for pharmacokinetic interation. Our system achieved best result in both task1 and task2. F-measure reaches 0.46 in task1 and 0.40 in task2.