论文标题

败血症背景下的人工神经网络用于疾病轨迹预测

Artificial neural networks for disease trajectory prediction in the context of sepsis

论文作者

Larie, Dale, An, Gary, Cockrell, Chase

论文摘要

就时间细胞因子和表型动力学而言,临床败血症的疾病轨迹可以解释为一个随机动力学系统。从临床测量结果中对患者状态进行准确预测的能力已经避免了生物医学群落,这主要是由于缺乏相关和高分辨率数据。我们已经利用了两个不同的神经网络体系结构,即长期的短期记忆和多层感知器,以进行五个测量的时间顺序,这些时间顺序是五个测量11个模拟的血清细胞因子浓度作为输入,并返回未来的细胞因子轨迹以及代表患者健康状况的总体计量的未来细胞因子轨迹。神经网络在50个时期内收敛,以进行细胞因子轨迹预测和健康状况回归,并具有预期的误差量(由于模拟中的随机性而引起的)。从特定的细胞因子概况到健康状况不是独特的,炎症水平的增加导致准确的预测较少。由于机器学习误差的传播与计算模型随着时间的关系结合在一起,因此应每天在现实中重新建立网络,因为随着系统的发展,预测会从真实的模型轨迹差异,因为系统朝着吸引概率的盆地发展。这项工作是使用人工神经网络来预测败血症疾病进展的概念证明。这项工作并非旨在取代受过训练的临床医生,而是目的是使用可量化的统计信息来增强直觉,以帮助他们做出最佳决定。我们注意到,这取决于所讨论的系统的有效计算模型,因为没有足够的数据来告知机器学习训练,人为智能的控制器。

The disease trajectory for clinical sepsis, in terms of temporal cytokine and phenotypic dynamics, can be interpreted as a random dynamical system. The ability to make accurate predictions about patient state from clinical measurements has eluded the biomedical community, primarily due to the paucity of relevant and high-resolution data. We have utilized two distinct neural network architectures, Long Short-Term Memory and Multi-Layer Perceptron, to take a time sequence of five measurements of eleven simulated serum cytokine concentrations as input and to return both the future cytokine trajectories as well as an aggregate metric representing the patient's state of health. The neural networks converged within 50 epochs for cytokine trajectory predictions and health-metric regressions, with the expected amount of error (due to stochasticity in the simulation). The mapping from a specific cytokine profile to a state-of-health is not unique, and increased levels of inflammation result in less accurate predictions. Due to the propagation of machine learning error combined with computational model stochasticity over time, the network should be re-grounded in reality daily as predictions can diverge from the true model trajectory as the system evolves towards a probabilistic basin of attraction. This work serves as a proof-of-concept for the use of artificial neural networks to predict disease progression in sepsis. This work is not intended to replace a trained clinician, rather the goal is to augment intuition with quantifiable statistical information to help them make the best decisions. We note that this relies on a valid computational model of the system in question as there does not exist sufficient data to inform a machine-learning trained, artificially intelligent, controller.

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