论文标题
使用GPU的高度连接尖峰皮层模型的快速模拟
Fast simulations of highly-connected spiking cortical models using GPUs
论文作者
论文摘要
在过去的十年中,对平行硬件系统的开发越来越兴趣,用于模拟大规模的尖峰神经元网络。与其他高度并行系统相比,GPU加速解决方案具有相对较低的成本和出色的多功能性的优势,这也归功于使用CUDA-C/C ++编程语言的可能性。 Neurongpu是一个基于新颖的Spike-Delivery算法,用于用C ++和CUDA-C ++编程语言编写的尖峰神经网络模型的大规模模拟的GPU库。该库包括简单的LIF(泄漏综合和传火)神经元模型以及具有基于当前或电导的突触,可定义的模型和不同设备的多个多动物ADEX(自适应 - 指示 - 融合和射线)神经元模型。 ADEX模型动力学的微分方程的数值解决方案是通过使用自适应级别尺寸控制的第五阶Runge-Kutta方法编写的并行实现进行的。在这项工作中,我们使用ADEX神经元和基于电导的突触来评估该文库对基于LIF神经元和基于电流的突触的皮质微电路模型的模拟的性能,以及基于LIF神经元和基于电流的突触。在这些模型上,我们将证明所提出的图书馆在每秒生物活动的模拟时间方面实现了最先进的性能。 In particular, using a single NVIDIA GeForce RTX 2080 Ti GPU board, the full-scale cortical-microcircuit model, which includes about 77,000 neurons and $3 \cdot 10^8$ connections, can be simulated at a speed very close to real time, while the simulation time of a balanced network of 1,000,000 AdEx neurons with 1,000 connections per neuron was about 70 s per second of biological activity.
Over the past decade there has been a growing interest in the development of parallel hardware systems for simulating large-scale networks of spiking neurons. Compared to other highly-parallel systems, GPU-accelerated solutions have the advantage of a relatively low cost and a great versatility, thanks also to the possibility of using the CUDA-C/C++ programming languages. NeuronGPU is a GPU library for large-scale simulations of spiking neural network models, written in the C++ and CUDA-C++ programming languages, based on a novel spike-delivery algorithm. This library includes simple LIF (leaky-integrate-and-fire) neuron models as well as several multisynapse AdEx (adaptive-exponential-integrate-and-fire) neuron models with current or conductance based synapses, user definable models and different devices. The numerical solution of the differential equations of the dynamics of the AdEx models is performed through a parallel implementation, written in CUDA-C++, of the fifth-order Runge-Kutta method with adaptive step-size control. In this work we evaluate the performance of this library on the simulation of a cortical microcircuit model, based on LIF neurons and current-based synapses, and on a balanced network of excitatory and inhibitory neurons, using AdEx neurons and conductance-based synapses. On these models, we will show that the proposed library achieves state-of-the-art performance in terms of simulation time per second of biological activity. In particular, using a single NVIDIA GeForce RTX 2080 Ti GPU board, the full-scale cortical-microcircuit model, which includes about 77,000 neurons and $3 \cdot 10^8$ connections, can be simulated at a speed very close to real time, while the simulation time of a balanced network of 1,000,000 AdEx neurons with 1,000 connections per neuron was about 70 s per second of biological activity.