论文标题

空间耦合生态振荡器的动力学模型

Dynamical Ising model of spatially-coupled ecological oscillators

论文作者

Nareddy, Vahini Reddy, Machta, Jonathan, Abbott, Karen C, Esmaeili, Shadisadat, Hastings, Alan

论文摘要

短距离相互作用的远程同步是生物学和物理系统中的一种熟悉模式,其中许多在同步时具有共同的``通用''属性集。耦合振荡器的常见生物系统已被证明是Ising通用类别的成员,这意味着非常简单的Ising模型在平稳性时复制了这些系统的某些空间统计。该观察结果之所以有用,是因为它揭示了空间模式的哪些方面独立于管理局部动态的细节,从而使对生物同步的更深入了解和更简单的基线模型。但是,在许多情况下,系统的动力学比其静态空间特性更有兴趣。在这里,我们询问动态的ISING模型是否可以使用带有两循环动力学的嘈杂耦合的跨置模型来复制生态系统的通用和非宇宙特征作为案例研究。标准的ISING模型做出了不切实际的动力学预测,但是带有内存的ISING模型通过使用附加参数来反映局部动力学以保持其振荡阶段的趋势来纠正这一点。通过将ISING模型的两个参数与内存拟合到模拟生态动力学,我们在其几个特征(同步动力学和异步动态,局部相变的概率,局部变化的概率,局部变化的概率以及预测未来动力学的能力之间的参数空间中的临界边界的位置)评估了ISING和生态模型之间的对应关系)。我们发现,具有内存的Ising模型在代表生态群体的这些特性方面相当擅长。这些模型之间的对应关系为简单且著名的Ising模型提供了成为理解复杂生物系统的宝贵工具的潜力。

Long-range synchrony from short-range interactions is a familiar pattern in biological and physical systems, many of which share a common set of ``universal'' properties at the point of synchronization. Common biological systems of coupled oscillators have been shown to be members of the Ising universality class, meaning that the very simple Ising model replicates certain spatial statistics of these systems at stationarity. This observation is useful because it reveals which aspects of spatial pattern arise independently of the details governing local dynamics, resulting in both deeper understanding of and a simpler baseline model for biological synchrony. However, in many situations a system's dynamics are of greater interest than their static spatial properties. Here, we ask whether a dynamical Ising model can replicate universal and non-universal features of ecological systems, using noisy coupled metapopulation models with two-cycle dynamics as a case study. The standard Ising model makes unrealistic dynamical predictions, but the Ising model with memory corrects this by using an additional parameter to reflect the tendency for local dynamics to maintain their phase of oscillation. By fitting the two parameters of the Ising model with memory to simulated ecological dynamics, we assess the correspondence between the Ising and ecological models in several of their features (location of the critical boundary in parameter space between synchronous and asynchronous dynamics, probability of local phase changes, and ability to predict future dynamics). We find that the Ising model with memory is reasonably good at representing these properties of ecological metapopulations. The correspondence between these models creates the potential for the simple and well-known Ising class of models to become a valuable tool for understanding complex biological systems.

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