论文标题

在细胞图像中散布生物噪声,重点是解释性

Distangling Biological Noise in Cellular Images with a focus on Explainability

论文作者

Sharma, Manik, Krishnamurthi, Ganapathy

论文摘要

近年来,一些药物和医疗的成本增加了,许多患者必须没有。分类项目可以使研究人员更加有效。 成本背后的最令人惊讶的原因之一是将新治疗送入市场需要多长时间。尽管技术和科学方面有所改善,但研发仍在继续落后。实际上,寻找新的待遇平均需要10年以上,而花费了数亿美元。反过来,大大降低治疗成本可以确保这些治疗速度更快地给患者。这项工作旨在通过创建一个细胞图像分类模型来解决该问题的一部分,该模型可以破译细胞中的遗传扰动(自然或人为地发生)。另一个有趣的问题是,是什么使学习模型以一种特定的方式决定,这可以进一步帮助揭开某些扰动的作用机理,并铺平了沿着深度学习模型来解释的方法。 我们展示了Grad-CAM可视化的结果,并为某些特征的意义与其他功能的重要性提出了理由。此外,我们讨论了这些重要特征在从深度学习模型中提取有用的诊断信息方面是如何关键的。

The cost of some drugs and medical treatments has risen in recent years that many patients are having to go without. A classification project could make researchers more efficient. One of the more surprising reasons behind the cost is how long it takes to bring new treatments to market. Despite improvements in technology and science, research and development continues to lag. In fact, finding new treatment takes, on average, more than 10 years and costs hundreds of millions of dollars. In turn, greatly decreasing the cost of treatments can make ensure these treatments get to patients faster. This work aims at solving a part of this problem by creating a cellular image classification model which can decipher the genetic perturbations in cell (occurring naturally or artificially). Another interesting question addressed is what makes the deep-learning model decide in a particular fashion, which can further help in demystifying the mechanism of action of certain perturbations and paves a way towards the explainability of the deep-learning model. We show the results of Grad-CAM visualizations and make a case for the significance of certain features over others. Further we discuss how these significant features are pivotal in extracting useful diagnostic information from the deep-learning model.

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