论文标题
使用微观和宏观网络指标揭示牛皮癣中的顶级交流基因模块
Using micro- and macro-level network metrics unveils top communicative gene modules in psoriasis
论文作者
论文摘要
背景:牛皮癣是皮肤多因素的慢性炎症性疾病,具有明显的发病率,其特征是表皮过度增殖。尽管牛皮癣病因尚未完全了解,但据信它具有多种关键组成部分。方法:为了阐明蛋白质蛋白质相互作用和转录组学水平的牛皮癣的复杂分子相互作用,我们分析了一组由170个配对病变和非静态样品组成的微阵列基因表达分析。之后,在系统级别的角度,基于微观和宏观级网络指标的差异表达基因的蛋白质 - 蛋白质相互作用网络进行了网络分析。结果:我们发现了17个顶级交流基因,在两个模块中,即细胞周期和免疫系统中鉴定出所有实验证明在牛皮癣中都是关键的基因。来自顶部交流基因的内部和基因间相互作用子网可能会进一步了解相应的特征机制。结论:确定了用于治疗/诊断目的的潜在基因组合。此外,我们提出的管道可能对更广泛的生物网络分析研究感兴趣。
Background: Psoriasis is a multifactorial chronic inflammatory disorder of the skin with significant morbidity, characterized by hyper proliferation of the epidermis. Even though psoriasis etiology is not fully understood, it is believed to be multifactorial with numerous key components. Methods: In order to cast light on the complex molecular interactions in psoriasis vulgaris at both protein-protein interactions and transcriptomics levels, we analyzed a set of microarray gene expression analysis consisting of 170 paired lesional and non-lesional samples. Afterwards, a network analysis was conducted on protein-protein interaction network of differentially expressed genes based on micro- and macro-level network metrics at a systemic level standpoint. Results: We found 17 top communicative genes, all of which experimentally proven to be pivotal in psoriasis were identified in two modules, namely, cell cycle and immune system. Intra- and inter-gene interaction subnetworks from the top communicative genes might provide further insight into the corresponding characteristic mechanisms. Conclusions: Potential gene combinations for therapeutic/diagnostics purposes were identified. Moreover, our proposed pipeline could be of interest to a broader range of biological network analysis studies.