论文标题

Pycro-Manager:用于集成显微镜硬件控制和图像处理的开源软件

Pycro-manager: open-source software for integrated microscopy hardware control and image processing

论文作者

Pinkard, Henry, Stuurman, Nico, Waller, Laura

论文摘要

开源显微镜采集软件μmanager在过去15年中一直是许多显微镜实验的重要工具,但是对于与图像采集和分析紧密耦合的实验并不容易使用。这是因为μmanager库是用C ++和Java编写的,而图像处理越来越多地使用数据科学和机器学习工具来最容易通过Python编程语言访问。我们提出了Pycro-Manager,这是一种能够快速开发此类实验的工具,同时还可以通过Python提供μmanager中现有工具的财富。

μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments in which image acquisition and analysis are closely coupled. This is because μManager libraries are written in C++ and Java, whereas image processing is increasingly carried out with data science and machine learning tools most easily accessible through the Python programming language. We present Pycro-Manager, a tool that enables rapid development of such experiments, while also providing access to the wealth of existing tools within μManager through Python.

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