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Recent development in deep learning techniques has attracted attention in decoding and classification in EEG signals. Despite several efforts utilizing different features of EEG signals, a significant research challenge is to use time-dependent features in combination with local and global features. There have been several efforts to remodel the deep learning convolution neural networks (CNNs) to capture time-dependency information by incorporating hand-crafted features, slicing the input data in a smaller time-windows, and recurrent convolution. However, these approaches partially solve the problem, but simultaneously hinder the CNN's capability to learn from unknown information that might be present in the data. To solve this, we have proposed a novel time encoding kernel (EnK) approach, which introduces the increasing time information during convolution operation in CNN. The encoded information by EnK lets CNN learn time-dependent features in-addition to local and global features. We performed extensive experiments on several EEG datasets: cognitive conflict (CC), physical-human robot collaboration (pHRC), P300 visual-evoked potentials, movement-related cortical potentials (MRCP). EnK outperforms the state-of-art by 12\% (F1 score). Moreover, the EnK approach required only one additional parameter to learn and can be applied to a virtually any CNN architectures with minimal efforts. These results support our methodology and show high potential to improve CNN performance in the context of time-series data in general.