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Stark deceleration enables the production of cold and dense molecular beams with applications in trapping, collisional studies, and precision measurement. Improving the efficiency of Stark deceleration, and hence the achievable molecular densities, is central to unlock the full potential of such studies. One of the chief limitations arises from the transverse focusing properties of Stark decelerators. We introduce a new operation strategy that circumvents this limit without any hardware modifications, and experimentally verify our results for hydroxyl radicals. Notably, improved focusing results in significant gains in molecule yield with increased operating voltage, formerly limited by transverse-longitudinal coupling. At final velocities sufficiently small for trapping, molecule flux improves by a factor of four, and potentially more with increased voltage. The improvement is more significant for less readily polarized species, thereby expanding the class of candidate molecules for Stark deceleration.